Add the pecans, melted butter, and 1 tablespoon of honey to a food processor. Pulse until the mixture becomes sticky and crumbly, blending smooth or leaving slightly chunky based on preference.
Line a muffin tin with liners or use a silicone mold. Divide the pecan mixture evenly between the cups and press firmly into the bottoms using your fingers or the back of a spoon to form the crust.
Without cleaning the food processor, add the softened cream cheese, lemon juice, lemon zest, and remaining 2 tablespoons of honey. Blend until completely smooth and creamy.
Spoon or pipe the cheesecake filling over the prepared crusts, smoothing the tops evenly.
Refrigerate for at least 2 hours, or until the cheesecakes are fully set. Serve chilled, topped with fresh berries if desired.