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Gluten-Free Chocolate Chip Muffins

These Gluten-Free Chocolate Chip Muffins are soft, tender, and made with almond flour and coconut flour for a naturally gluten free base. Sweetened with honey and filled with chocolate chips, they bake up moist and flavorful without the need for gluten free flour blends or specialty binders.

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A Quick Look at the Recipe

Recipe Name: Gluten-Free Chocolate Chip Muffins
🕒 Ready In: ~30 minutes
👪 Serves: 12 muffins
🍽 Calories: ~210 per muffin (estimated)
🥣 Main Ingredients: Almond flour, coconut flour, eggs, honey, butter, chocolate chips
📖 Dietary Info: Gluten free; grain free
👌 Difficulty: Easy - mix and bake

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The combination of almond flour and coconut flour creates a balanced texture that holds together well while staying light and fluffy. With a simple one bowl method and everyday ingredients, this gluten free chocolate chip muffin recipe is easy enough for weekday baking and reliable enough for sharing.

If you enjoy gluten-free baking, you might also like our Pumpkin Chocolate Chip Bars, Gluten-Free Applesauce Cake, Peanut Butter Banana Cookies, or Superhero Muffins. These easy recipes are great for breakfasts, snacks, or simple treats made with wholesome ingredients.

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Why You'll Love these Gluten-Free Chocolate Chip Muffins:

Soft and Moist: Almond flour and coconut flour create tender muffins that stay moist without being dense.
Naturally Gluten Free: Made without wheat or gluten flour blends, using simple grain free ingredients instead.
Sweetened with Honey: Honey adds natural sweetness that pairs perfectly with the chocolate chips.
Easy One Bowl Recipe: The batter comes together quickly with minimal prep and cleanup.
Great for Any Time: These muffins work well for breakfast, snacks, or a simple gluten free treat.

Key Ingredients:

  • butter. Melted butter adds rich flavor and moisture. For dairy-free, substitute with melted coconut oil or avocado oil.
  • honey. A natural sweetener that keeps the flavor mild and wholesome. Maple syrup can also be used.
  • almond flour. Adds moisture and a soft, cakey texture while keeping the muffins gluten-free.
  • semi-sweet chocolate chips. Add rich chocolate flavor to every bite. Use dairy-free chips if needed.

Scroll to the recipe card at the bottom of this page for exact quantities.

Easy Substitutions & Variations:

  • Dairy free option: Use melted coconut oil or a dairy free butter alternative and replace buttermilk with dairy free milk plus a splash of lemon juice.
  • Sweetener swap: Maple syrup can be used in place of honey, though the muffins may be slightly softer.
  • Add nuts: Chopped walnuts or pecans add extra texture and pair well with the chocolate chips.
  • Mini muffins: Bake the batter in a mini muffin tin and reduce the baking time to about 12 to 15 minutes.
  • Lower sweetness: Reduce the chocolate chips slightly for a less sweet muffin that works well for breakfast.

How to Make Gluten-Free Chocolate Chip Muffins:

  1. Preheat the oven to 350°F and line a muffin tin with paper liners.
  2. In a large mixing bowl, whisk together the melted butter, buttermilk, eggs, honey, and vanilla extract until smooth and well combined.
  3. Add the almond flour, coconut flour, baking powder, and salt to the bowl. Stir gently until a smooth batter forms, being careful not to overmix.
  4. Fold in the chocolate chips until evenly distributed throughout the batter.
  5. Divide the batter evenly between the muffin liners, filling each about three quarters full.
  6. Bake for 18 to 22 minutes, or until the muffins are set and a toothpick inserted into the center comes out clean or with a few moist crumbs.
  7. Remove from the oven and let the muffins cool in the pan for a few minutes before transferring to a wire rack to cool completely.

Recipe Notes & Tips:

  • Measure flours carefully: Almond flour and coconut flour absorb moisture differently, so spoon and level for the most consistent texture.
  • Do not over mix: Stir just until the batter is smooth to keep the muffins light and tender.
  • Check doneness early: Gluten free muffins can brown quickly, so start checking a few minutes before the end of the bake time.
  • Let them cool fully: Allowing the muffins to cool helps them set and improves their texture.
  • Serving Suggestions: Enjoy these muffins on their own or pair them with recipes like Yogurt Parfaits, Protein Iced Coffee, or Fig Chia Pudding for an easy breakfast or snack.

How to Store:

Room Temperature: Store muffins in an airtight container at room temperature for up to 3 days. Place a paper towel in the container to help absorb moisture and keep the tops from getting sticky.
Refrigerate: For longer freshness, store in the fridge for up to 5 days. Warm slightly before serving to bring back softness.
Freeze: Let muffins cool completely, then wrap individually or place in a freezer-safe bag or container. Freeze for up to 2 months.
To Reheat: Microwave a muffin for 20-30 seconds straight from the fridge or 45-60 seconds from frozen.

Gluten-Free Chocolate Chip Muffins FAQs:

Why are my gluten-free chocolate chip muffins dry?

Gluten-free chocolate chip muffins can turn dry if too much coconut flour is used or if the muffins are over baked, since coconut flour absorbs a lot of moisture.

Do gluten-free chocolate chip muffins need xanthan gum?

Gluten-free chocolate chip muffins made with almond flour and coconut flour do not need xanthan gum because the eggs provide enough structure and binding.

How long do gluten-free chocolate chip muffins stay fresh?

Gluten-free chocolate chip muffins stay fresh for up to 3 days at room temperature when stored in an airtight container, or up to 5 days in the refrigerator.

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Gluten-Free Chocolate Chip Muffins

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These Gluten-Free Chocolate Chip Muffins are soft, tender, and made with almond flour and coconut flour for a naturally gluten free base.
Prep Time 5 minutes
Cook Time 20 minutes
Total Time 25 minutes
Servings: 12 servings
Course: Breakfast, Snack
Cuisine: American
Calories: 310

Ingredients  

Instructions
 

  1. Preheat the oven to 350°F and line a muffin tin with paper liners.
  2. In a large mixing bowl, whisk together the melted butter, buttermilk, eggs, honey, and vanilla extract until smooth and well combined.
  3. Add the almond flour, coconut flour, baking powder, and salt to the bowl. Stir gently until a smooth batter forms, being careful not to overmix.
  4. Fold in the chocolate chips until evenly distributed throughout the batter.
  5. Divide the batter evenly between the muffin liners, filling each about three quarters full.
  6. Bake for 18 to 22 minutes, or until the muffins are set and a toothpick inserted into the center comes out clean or with a few moist crumbs.
  7. Remove from the oven and let the muffins cool in the pan for a few minutes before transferring to a wire rack to cool completely.

Nutrition

Calories: 310kcalCarbohydrates: 20gProtein: 7gFat: 24gSaturated Fat: 10gPolyunsaturated Fat: 1gMonounsaturated Fat: 4gTrans Fat: 0.3gCholesterol: 50mgSodium: 389mgPotassium: 115mgFiber: 4gSugar: 13gVitamin A: 300IUVitamin C: 0.03mgCalcium: 126mgIron: 2mg

Notes

  • Measure flours carefully: Almond flour and coconut flour absorb moisture differently, so spoon and level for the most consistent texture.
  • Do not over mix: Stir just until the batter is smooth to keep the muffins light and tender.
  • Check doneness early: Gluten free muffins can brown quickly, so start checking a few minutes before the end of the bake time.
  • Let them cool fully: Allowing the muffins to cool helps them set and improves their texture.
  • Serving Suggestions: Enjoy these muffins on their own or pair them with recipes like Yogurt Parfaits, Protein Iced Coffee, or Fig Chia Pudding for an easy breakfast or snack.

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