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Gluten-Free Carrot Cake Cupcakes

These Gluten-Free Carrot Cake Cupcakes are soft, moist, and full of warm spice, made completely with almond flour, shredded carrots, honey, and coconut oil for a wholesome, naturally gluten-free treat.

Cupcake in wrapper, topped with crushed nuts.

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A Quick Look at the Recipe

Recipe Name: Gluten-Free Carrot Cake Cupcakes
🕒 Ready In: ~25 minutes
👪 Serves: 8 cupcakes
🍽 Calories: ~280 per cupcake
🥣 Main Ingredients: Almond flour, eggs, coconut oil, honey, shredded carrots, pecans, warm spices
📖 Dietary Info: Naturally gluten-free and grain-free; dairy-free without frosting
👌 Difficulty: Easy - simple mixing, no special equipment required

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Almond flour keeps these cupcakes perfectly moist without crumbling, while honey adds natural sweetness and helps the cupcakes brown beautifully. Shredded carrots add moisture and texture, and the spices create that signature carrot cake warmth. They're delicious on their own but even better topped with a swirl of cream cheese frosting for a bakery-style finish.

For more gluten-free baking inspiration, try our Chocolate Ricotta Cake, Gluten-Free Lemon Bars, or Basque Cheesecake - all easy, wholesome desserts made with simple ingredients.

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Why You'll Love these Gluten-Free Carrot Cake Cupcakes:

Moist and tender: Shredded carrots and almond flour keep these cupcakes soft and flavorful without being dense.
Naturally sweetened: Made with honey instead of refined sugar for a wholesome, light sweetness.
Warmly spiced: Cinnamon, ginger, and nutmeg create the perfect cozy carrot cake flavor.
Gluten-free and grain-free: A healthy twist on a classic dessert made with simple, nourishing ingredients.
Perfect for any occasion: Great for spring gatherings, Easter, or a healthier everyday treat.
Customizable: Add raisins, coconut, or swap pecans for walnuts to suit your taste.

Key Ingredients:

  • almond flour. Gives the cupcakes a moist, tender crumb while keeping them gluten-free. Use finely ground almond flour, not almond meal, for the best texture.
  • eggs. Provide structure and moisture; room temperature eggs blend more easily into the batter.
  • honey. Naturally sweetens the cupcakes and enhances the spice flavor. Maple syrup can be used as an alternative.
  • shredded carrots. Use freshly shredded carrots, they're more moist and flavorful than pre-shredded ones from a bag.
  • pecans. Add crunch and richness. Walnuts or shredded coconut make great substitutions if preferred.

Scroll to the recipe card at the bottom of this page for exact quantities.

Easy Substitutions & Variations:

  • Dairy-Free Option: Use a dairy-free cream cheese frosting or enjoy the cupcakes plain for a naturally dairy-free dessert.
  • Sweetener Swap: Replace honey with maple syrup for a deeper, caramel-like sweetness.
  • Nut-Free Version: Omit the pecans or replace them with shredded coconut or raisins.
  • Oil Alternatives: Melted butter or avocado oil can be used instead of coconut oil.
  • Extra Flavor: Add shredded coconut, crushed pineapple (drained well), or a pinch of cloves for more classic carrot cake warmth.
  • Spice Variations: Adjust cinnamon, ginger, and nutmeg to taste, or use a premade pumpkin pie spice blend.

How to Make Carrot Cake Cupcakes:

  1. Preheat oven to 350°F and line a muffin tin with 10-12 cupcake liners.
  2. In a medium bowl, whisk together the almond flour, baking powder, cinnamon, ginger, and nutmeg.
  3. In a separate large bowl, whisk the eggs, melted coconut oil, honey, and vanilla extract until smooth.
  4. Add the dry ingredients to the wet ingredients and stir until fully combined.
  5. Fold in the shredded carrots and chopped pecans until evenly distributed.
  6. Spoon the batter evenly into the prepared cupcake liners, filling each about ¾ full.
  7. Bake for 18-22 minutes, or until a toothpick inserted in the center comes out clean.
  8. Let cool in the pan for 5 minutes, then transfer to a wire rack to cool completely before frosting, if desired.

Recipe Notes & Tips:

  • Shred your own carrots: Freshly grated carrots are moister and blend better into the batter than pre-packaged ones.
  • Mix gently: Stir just until the batter comes together, over mixing can make the cupcakes dense.
  • Don't over bake: Check for doneness around 18 minutes; almond flour browns quickly, so pull them out as soon as a toothpick comes out clean.
  • Cool completely before frosting: If using cream cheese or glaze, let the cupcakes cool fully to prevent melting.
  • Add-ins: Fold in ¼ cup of raisins, shredded coconut, or chopped pineapple for extra flavor and texture.
  • Make it dairy-free: Use coconut oil and top with a dairy-free frosting or coconut cream whip.
  • Nut-free option: Omit the pecans or replace them with sunflower seeds or shredded coconut.
gluten-free carrot cake cupcakes with bite taken out.

How to Store:

Room Temperature: Store unfrosted cupcakes in an airtight container for up to 2 days.
Refrigerator: Store frosted or unfrosted cupcakes in an airtight container for up to 5 days. Let them sit at room temperature for 10-15 minutes before serving for the best texture.
Freezer: Freeze unfrosted cupcakes in a single layer until solid, then transfer to a freezer-safe bag or container. Store for up to 2 months. Thaw overnight in the refrigerator before frosting or serving.

Gluten-Free Carrot Cake Cupcakes FAQs:

Why are my gluten-free carrot cake cupcakes crumbly?

If your gluten-free carrot cake cupcakes are crumbly, it's usually from too much almond flour or overbaking. Almond flour is delicate, so precise measuring matters. Ensure your coconut oil is fully mixed into the batter, and allow the cupcakes to cool in the pan for 5 minutes before transferring to a rack. This helps them set without falling apart.

Can I make gluten-free carrot cake cupcakes dairy-free?

Yes. The cupcakes themselves are naturally dairy-free, just use a dairy-free cream cheese frosting or a coconut whipped topping. The texture and crumb remain soft and moist with either option, making these gluten-free carrot cake cupcakes an easy dairy-free dessert.

Can I add raisins or pineapple to gluten-free carrot cake cupcakes?

Yes, both work great. Add ¼ cup raisins or finely chopped, well-drained pineapple to the batter. These additions give gluten-free carrot cake cupcakes extra sweetness and moisture without altering the bake time. Just avoid large fruit pieces to maintain structure.

Gluten-free carrot cake cupcakes with swirled frosting and chopped nuts on a white surface.

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gluten-free carrot cake cupcake

Gluten-Free Carrot Cake Cupcakes

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These Gluten-Free Carrot Cake Cupcakes are soft, moist, and full of warm spice, made completely with almond flour, shredded carrots, honey, and coconut oil.
Prep Time 10 minutes
Cook Time 20 minutes
Total Time 30 minutes
Servings: 8 servings
Course: Dessert, Snack
Cuisine: American
Calories: 288

Ingredients  

Instructions
 

  1. Preheat oven to 350°F and line a muffin tin with 10-12 cupcake liners.
  2. In a medium bowl, whisk together the almond flour, baking powder, cinnamon, ginger, and nutmeg.
  3. In a separate large bowl, whisk the eggs, melted coconut oil, honey, and vanilla extract until smooth.
  4. Add the dry ingredients to the wet ingredients and stir until fully combined.
  5. Fold in the shredded carrots and chopped pecans until evenly distributed.
  6. Spoon the batter evenly into the prepared cupcake liners, filling each about ¾ full.
  7. Bake for 18-22 minutes, or until a toothpick inserted in the center comes out clean.
  8. Let cool in the pan for 5 minutes, then transfer to a wire rack to cool completely before frosting, if desired.

Nutrition

Calories: 288kcalCarbohydrates: 19gProtein: 7gFat: 23gSaturated Fat: 7gPolyunsaturated Fat: 2gMonounsaturated Fat: 3gTrans Fat: 0.004gCholesterol: 41mgSodium: 133mgPotassium: 103mgFiber: 3gSugar: 14gVitamin A: 2737IUVitamin C: 1mgCalcium: 122mgIron: 1mg

Notes

  • Shred your own carrots: Freshly grated carrots are moister and blend better into the batter than pre-packaged ones.
  • Mix gently: Stir just until the batter comes together, over mixing can make the cupcakes dense.
  • Don't over bake: Check for doneness around 18 minutes; almond flour browns quickly, so pull them out as soon as a toothpick comes out clean.
  • Cool completely before frosting: If using cream cheese or glaze, let the cupcakes cool fully to prevent melting.
  • Add-ins: Fold in ¼ cup of raisins, shredded coconut, or chopped pineapple for extra flavor and texture.
  • Make it dairy-free: Use coconut oil and top with a dairy-free frosting or coconut cream whip.
  • Nut-free option: Omit the pecans or replace them with sunflower seeds or shredded coconut.

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